X-Git-Url: https://git.xandkar.net/?p=dups.git;a=blobdiff_plain;f=dups.ml;h=a2e0181b5ae84cad13245337df20cb989395fd25;hp=8a555e8246b908c9a90ca1b1de43518633fb7933;hb=389dccafe4b8d3353db36f0cab3de5b9ea8de9ce;hpb=03db9aee3a879fdb6aef6b40d86b9aca3898a376

diff --git a/dups.ml b/dups.ml
index 8a555e8..a2e0181 100644
--- a/dups.ml
+++ b/dups.ml
@@ -2,29 +2,302 @@ open Printf
 
 module Array = ArrayLabels
 module List  = ListLabels
+module StrSet = Set.Make(String)
+module Unix  = UnixLabels
+
+module Metrics : sig
+  type t
+
+  val init
+    : unit -> t
+  val report
+    : t
+    -> time_all:float
+    -> time_group_by_size:float
+    -> time_group_by_head:float
+    -> time_group_by_digest:float
+    -> unit
+
+  val file_considered
+    : t -> size:int -> unit
+  val file_ignored
+    : t -> size:int -> unit
+  val file_empty
+    : t -> unit
+  val file_sampled
+    : t -> unit
+  val chunk_read
+    : t -> size:int -> unit
+  val file_unique_size
+    : t -> size:int -> unit
+  val file_unique_sample
+    : t -> size:int -> unit
+  val file_hashed
+    : t -> size:int -> unit
+  val digest
+    : t -> unit
+  val redundant_data
+    : t -> size:int -> unit
+end = struct
+  type t =
+    { considered_files    : int ref
+    ; considered_bytes    : int ref
+    ; empty               : int ref
+    ; ignored_files       : int ref
+    ; ignored_bytes       : int ref
+    ; unique_size_files   : int ref
+    ; unique_size_bytes   : int ref
+    ; unique_sample_files : int ref
+    ; unique_sample_bytes : int ref
+    ; sampled_files       : int ref
+    ; sampled_bytes       : int ref
+    ; hashed_files        : int ref
+    ; hashed_bytes        : int ref
+    ; digests             : int ref
+    ; redundant_data      : int ref
+    }
+
+  let init () =
+    { considered_files    = ref 0
+    ; considered_bytes    = ref 0
+    ; empty               = ref 0
+    ; ignored_files       = ref 0
+    ; ignored_bytes       = ref 0
+    ; unique_size_files   = ref 0
+    ; unique_size_bytes   = ref 0
+    ; sampled_files       = ref 0
+    ; sampled_bytes       = ref 0
+    ; hashed_files        = ref 0
+    ; hashed_bytes        = ref 0
+    ; unique_sample_files = ref 0
+    ; unique_sample_bytes = ref 0
+    ; digests             = ref 0
+    ; redundant_data      = ref 0
+    }
+
+  let add sum addend =
+    sum := !sum + addend
+
+  let file_considered t ~size =
+    incr t.considered_files;
+    add t.considered_bytes size
+
+  let file_ignored {ignored_files; ignored_bytes; _} ~size =
+    incr ignored_files;
+    add ignored_bytes size
+
+  let file_empty t =
+    incr t.empty
+
+  let chunk_read t ~size =
+    add t.sampled_bytes size
+
+  let file_sampled t =
+    incr t.sampled_files
+
+  let file_unique_size t ~size =
+    incr t.unique_size_files;
+    add t.unique_size_bytes size
+
+  let file_unique_sample t ~size =
+    incr t.unique_sample_files;
+    add t.unique_sample_bytes size
+
+  let file_hashed t ~size =
+    incr t.hashed_files;
+    add t.hashed_bytes size
+
+  let digest t =
+    incr t.digests
+
+  let redundant_data t ~size =
+    add t.redundant_data size
+
+  let report
+    t
+    ~time_all
+    ~time_group_by_size
+    ~time_group_by_head
+    ~time_group_by_digest
+  =
+    let b_to_mb b = (float_of_int b) /. 1024. /. 1024. in
+    let b_to_gb b = (b_to_mb b) /. 1024. in
+    eprintf "Time                         : %8.2f seconds\n%!"
+      time_all;
+    eprintf "Considered                   : %8d files  %6.2f Gb\n%!"
+      !(t.considered_files)
+      (b_to_gb !(t.considered_bytes));
+    eprintf "Sampled                      : %8d files  %6.2f Gb\n%!"
+      !(t.sampled_files)
+      (b_to_gb !(t.sampled_bytes));
+    eprintf "Hashed                       : %8d files  %6.2f Gb  %6.2f seconds\n%!"
+      !(t.hashed_files)
+      (b_to_gb !(t.hashed_bytes))
+      time_group_by_digest;
+    eprintf "Digests                      : %8d\n%!"
+      !(t.digests);
+    eprintf "Duplicates (Hashed - Digests): %8d files  %6.2f Gb\n%!"
+      (!(t.hashed_files) - !(t.digests))
+      (b_to_gb !(t.redundant_data));
+    eprintf "Skipped due to 0      size   : %8d files\n%!" !(t.empty);
+    eprintf "Skipped due to unique size   : %8d files  %6.2f Gb  %6.2f seconds\n%!"
+      !(t.unique_size_files)
+      (b_to_gb !(t.unique_size_bytes))
+      time_group_by_size;
+    eprintf "Skipped due to unique sample : %8d files  %6.2f Gb  %6.2f seconds\n%!"
+      !(t.unique_sample_files)
+      (b_to_gb !(t.unique_sample_bytes))
+      time_group_by_head;
+    eprintf "Ignored due to regex match   : %8d files  %6.2f Gb\n%!"
+      !(t.ignored_files)
+      (b_to_gb !(t.ignored_bytes))
+end
+
+module M = Metrics
 
 module Stream : sig
   type 'a t
-  val lines : in_channel -> string t
-  val rec_file_paths : root:string -> string t
+
+  val create : (unit -> 'a option) -> 'a t
+
+  val of_queue : 'a Queue.t -> 'a t
+
   val iter : 'a t -> f:('a -> unit) -> unit
+
+  val map : 'a t -> f:('a -> 'b) -> 'b t
+
+  val filter : 'a t -> f:('a -> bool) -> 'a t
+
+  val concat : ('a t) list -> 'a t
+
+  val group_by : 'a t -> f:('a -> 'b) -> ('b * int * 'a list) t
 end = struct
   module S = Stream
 
   type 'a t =
-    'a S.t
+    {mutable streams : ('a S.t) list}
+
+  let create f =
+    {streams = [S.from (fun _ -> f ())]}
+
+  let of_queue q =
+    create (fun () ->
+      match Queue.take q with
+      | exception Queue.Empty ->
+          None
+      | x ->
+          Some x
+    )
+
+  let rec next t =
+    match t.streams with
+    | [] ->
+        None
+    | s :: streams ->
+        (match S.next s with
+        | exception Stream.Failure ->
+            t.streams <- streams;
+            next t
+        | x ->
+            Some x
+        )
+
+  let map t ~f =
+    create (fun () ->
+      match next t with
+      | None   -> None
+      | Some x -> Some (f x)
+    )
+
+  let filter t ~f =
+    let rec filter () =
+      match next t with
+      | None ->
+          None
+      | Some x when f x ->
+          Some x
+      | Some _ ->
+          filter ()
+    in
+    create filter
+
+  let iter t ~f =
+    List.iter t.streams ~f:(S.iter f)
+
+  let concat ts =
+    {streams = List.concat (List.map ts ~f:(fun {streams} -> streams))}
+
+  let group_by t ~f =
+    let groups_tbl = Hashtbl.create 1_000_000 in
+    let group_update x =
+      let group = f x in
+      let members =
+        match Hashtbl.find_opt groups_tbl group with
+        | None ->
+            (1, [x])
+        | Some (n, xs) ->
+            (succ n, x :: xs)
+      in
+      Hashtbl.replace groups_tbl group members
+    in
+    iter t ~f:group_update;
+    let groups = Queue.create () in
+    Hashtbl.iter
+      (fun name (length, members) -> Queue.add (name, length, members) groups)
+      groups_tbl;
+    of_queue groups
+end
+
+module In_channel : sig
+  val lines : in_channel -> string Stream.t
+end = struct
+  let lines ic =
+    Stream.create (fun () ->
+      match input_line ic with
+      | exception End_of_file ->
+          None
+      | line ->
+          Some line
+    )
+end
+
+module File : sig
+  type t =
+    { path : string
+    ; size : int
+    }
+
+  val find : string -> t Stream.t
+  (** Find all files in the directory tree, starting from the given root path *)
+
+  val lookup : string Stream.t -> t Stream.t
+  (** Lookup file info for given paths *)
+
+  val filter_out_unique_sizes : t Stream.t -> metrics:M.t -> t Stream.t
+  val filter_out_unique_heads : t Stream.t -> len:int -> metrics:M.t -> t Stream.t
+end = struct
+  type t =
+    { path : string
+    ; size : int
+    }
+
+  let lookup paths =
+    Stream.map paths ~f:(fun path ->
+      let {Unix.st_size = size; _} = Unix.lstat path in
+      {path; size}
+    )
 
-  let rec_file_paths ~root =
+  let find root =
     let dirs  = Queue.create () in
     let files = Queue.create () in
-    Queue.add root dirs;
     let explore parent =
       Array.iter (Sys.readdir parent) ~f:(fun child ->
         let path = Filename.concat parent child in
-        let {Unix.st_kind = file_kind; _} = Unix.lstat path in
+        let {Unix.st_kind = file_kind; st_size; _} = Unix.lstat path in
         match file_kind with
         | Unix.S_REG ->
-            Queue.add path files
+            let file = {path; size = st_size} in
+            Queue.add file files
         | Unix.S_DIR ->
             Queue.add path dirs
         | Unix.S_CHR
@@ -35,79 +308,230 @@ end = struct
             ()
       )
     in
-    let next_dir () =
-      match Queue.take dirs with
-      | exception Queue.Empty ->
-          ()
-      | dir ->
-          explore dir
+    explore root;
+    let rec next () =
+      match Queue.is_empty files, Queue.is_empty dirs with
+      | false, _     -> Some (Queue.take files)
+      | true , true  -> None
+      | true , false ->
+          explore (Queue.take dirs);
+          next ()
     in
-    let next_file () =
-      match Queue.take files with
-      | exception Queue.Empty ->
-          None
-      | file_path ->
-          Some file_path
-    in
-    S.from (fun _ ->
-      next_dir ();
-      next_file ()
-    )
+    Stream.create next
 
-  let lines ic =
-    S.from (fun _ ->
-      match input_line ic with
-      | exception End_of_file ->
-          None
-      | line ->
-          Some line
-    )
+  let filter_out_singletons files ~group ~handle_singleton =
+    let q = Queue.create () in
+    Stream.iter (Stream.group_by files ~f:group) ~f:(fun group ->
+      let (_, n, members) = group in
+      if n > 1 then
+        List.iter members ~f:(fun m -> Queue.add m q)
+      else
+        handle_singleton group
+    );
+    Stream.of_queue q
 
-  let iter t ~f =
-    S.iter f t
+  let filter_out_unique_sizes files ~metrics =
+    filter_out_singletons
+      files
+      ~group:(fun {size; _} -> size)
+      ~handle_singleton:(fun (size, _, _) -> M.file_unique_size metrics ~size)
+
+  let head path ~len ~metrics =
+    let buf = Bytes.make len ' ' in
+    let ic = open_in_bin path in
+    let rec read pos len =
+      assert (len >= 0);
+      if len = 0 then
+        ()
+      else begin
+        let chunk_size = input ic buf pos len in
+        M.chunk_read metrics ~size:chunk_size;
+        if chunk_size = 0 then (* EOF *)
+          ()
+        else
+          read (pos + chunk_size) (len - chunk_size)
+      end
+    in
+    read 0 len;
+    close_in ic;
+    Bytes.to_string buf
+
+  let filter_out_unique_heads files ~len ~metrics =
+    filter_out_singletons
+      files
+      ~group:(fun {path; _} ->
+        M.file_sampled metrics;
+        head path ~len ~metrics
+      )
+      ~handle_singleton:(fun (_, _, files) ->
+        let {size; _} = List.hd files in  (* Guaranteed non-empty *)
+        M.file_unique_sample metrics ~size
+      )
 end
 
 type input =
-  | Root_path of string
-  | Paths_on_stdin
+  | Stdin
+  | Directories of string list
+
+type output =
+  | Stdout
+  | Directory of string
+
+type opt =
+  { input  : input
+  ; output : output
+  ; ignore : Str.regexp option
+  ; sample : int
+  }
 
-let main input =
-  let paths =
+let make_input_stream input ignore ~metrics =
+  let input =
     match input with
-    | Paths_on_stdin -> Stream.lines stdin
-    | Root_path root -> Stream.rec_file_paths ~root
+    | Stdin ->
+        File.lookup (In_channel.lines stdin)
+    | Directories paths ->
+        let paths = StrSet.elements (StrSet.of_list paths) in
+        Stream.concat (List.map paths ~f:File.find)
   in
-  let paths_by_digest = Hashtbl.create 1_000_000 in
-  let path_count = ref 0 in
-  let t0 = Sys.time () in
-  Stream.iter paths ~f:(fun path ->
-    incr path_count;
-    try
-      let digest = Digest.file path in
-      let paths =
-        match Hashtbl.find_opt paths_by_digest digest with
-        | None ->
-            []
-        | Some paths ->
-            paths
-      in
-      Hashtbl.replace paths_by_digest digest (path :: paths)
-    with Sys_error e ->
-      eprintf "WARNING: Failed to process %S: %S\n%!" path e
+  Stream.filter input ~f:(fun {File.path; size} ->
+    M.file_considered metrics ~size;
+    let empty = size = 0 in
+    if empty then M.file_empty metrics;
+    let ignored =
+      match ignore with
+      | Some regexp when (Str.string_match regexp path 0) ->
+          M.file_ignored metrics ~size;
+          true
+      | Some _ | None ->
+          false
+    in
+    (not empty) && (not ignored)
+  )
+
+let make_output_fun = function
+  | Stdout ->
+      fun digest n_files files ->
+        printf "%s %d\n%!" (Digest.to_hex digest) n_files;
+        List.iter files ~f:(fun {File.path; _} ->
+          printf "    %S\n%!" path
+        )
+  | Directory dir ->
+      fun digest _ files ->
+        let digest = Digest.to_hex digest in
+        let dir = Filename.concat dir (String.sub digest 0 2) in
+        Unix.mkdir dir ~perm:0o700;
+        let oc = open_out (Filename.concat dir digest) in
+        List.iter files ~f:(fun {File.path; _} ->
+          output_string oc (sprintf "%S\n%!" path)
+        );
+        close_out oc
+
+let main {input; output; ignore; sample = sample_len} =
+  let t0_all = Sys.time () in
+  let metrics = M.init () in
+  let output = make_output_fun  output in
+  let input  = make_input_stream input ignore ~metrics in
+  (* TODO: Make a nice(r) abstraction to re-assemble pieces in the pipeline:
+   *
+   * from input           to files_by_size
+   * from files_by_size   to files_by_sample
+   * from files_by_sample to files_by_digest
+   * from files_by_digest to output
+   *
+   * input |> files_by_size |> files_by_sample |> files_by_digest |> output
+   *)
+
+  let files = input in
+
+  let t0_group_by_size = Sys.time () in
+  let files = File.filter_out_unique_sizes files ~metrics in
+  let t1_group_by_size = Sys.time () in
+
+  let t0_group_by_sample = t1_group_by_size in
+  let files = File.filter_out_unique_heads files ~len:sample_len ~metrics in
+  let t1_group_by_sample = Sys.time () in
+
+  let t0_group_by_digest = t1_group_by_sample in
+  let groups =
+    Stream.group_by files ~f:(fun {File.path; size} ->
+      M.file_hashed metrics ~size;
+      Digest.file path
+    )
+  in
+  let t1_group_by_digest = Sys.time () in
+
+  Stream.iter groups ~f:(fun (d, n, files) ->
+    M.digest metrics;
+    if n > 1 then
+      M.redundant_data metrics ~size:(n * (List.hd files).File.size);
+      output d n files
   );
-  Hashtbl.iter
-    (fun digest paths ->
-      let n_paths = List.length paths in
-      if n_paths > 1 then begin
-        printf "%s %d\n%!" (Digest.to_hex digest) n_paths;
-        List.iter paths ~f:(fun path -> printf "    %s\n%!" path)
-      end
+
+  let t1_all = Sys.time () in
+
+  M.report metrics
+    ~time_all:            (t1_all             -. t0_all)
+    ~time_group_by_size:  (t1_group_by_size   -. t0_group_by_size)
+    ~time_group_by_head:  (t1_group_by_sample -. t0_group_by_sample)
+    ~time_group_by_digest:(t1_group_by_digest -. t0_group_by_digest)
+
+let get_opt () : opt =
+  let assert_ test x msg =
+    if not (test x) then begin
+      eprintf "%s\n%!" msg;
+      exit 1
+    end
+  in
+  let assert_file_exists path =
+    assert_ Sys.file_exists path (sprintf "File does not exist: %S" path)
+  in
+  let assert_file_is_dir path =
+    assert_ Sys.is_directory path (sprintf "File is not a directory: %S" path)
+  in
+  let input  = ref Stdin in
+  let output = ref Stdout in
+  let ignore = ref None in
+  let sample = ref 256 in
+  let spec =
+    [ ( "-out"
+      , Arg.String (fun path ->
+          assert_file_exists path;
+          assert_file_is_dir path;
+          output := Directory path
+        )
+      , " Output to this directory instead of stdout."
+      )
+    ; ( "-ignore"
+      , Arg.String (fun regexp -> ignore := Some (Str.regexp regexp))
+      , " Ignore file paths which match this regexp pattern (see Str module)."
+      )
+    ; ( "-sample"
+      , Arg.Set_int sample
+      , (sprintf " Byte size of file samples to use. Default: %d" !sample)
+      )
+    ]
+  in
+  Arg.parse
+    (Arg.align spec)
+    (fun path ->
+      assert_file_exists path;
+      assert_file_is_dir path;
+      match !input with
+      | Stdin ->
+          input := Directories [path]
+      | Directories paths ->
+          input := Directories (path :: paths)
     )
-    paths_by_digest;
-  let t1 = Sys.time () in
-  eprintf "Processed %d files in %f seconds.\n%!" !path_count (t1 -. t0)
+    "";
+  assert_
+    (fun x -> x > 0)
+    !sample
+    (sprintf "Sample size cannot be negative: %d" !sample);
+  { input  = !input
+  ; output = !output
+  ; ignore = !ignore
+  ; sample = !sample
+  }
 
 let () =
-  let input = ref Paths_on_stdin in
-  Arg.parse [] (fun path -> input := Root_path path) "";
-  main !input
+  main (get_opt ())