X-Git-Url: https://git.xandkar.net/?p=dups.git;a=blobdiff_plain;f=dups.ml;h=5a09124c8bf920cedff189b038c58aaedd46600e;hp=b6782b68f9021bdbc81522d75ca236dc029a8a02;hb=487389a4b8e8e30c70b66f5b1cc5c1510ce5a6be;hpb=e09dff7f9b5875b81cf50b33dcf97635518f7c28

diff --git a/dups.ml b/dups.ml
index b6782b6..5a09124 100644
--- a/dups.ml
+++ b/dups.ml
@@ -2,7 +2,7 @@ open Printf
 
 module Array = ArrayLabels
 module List  = ListLabels
-module StrSet= Set.Make(String)
+module StrSet = Set.Make(String)
 module Unix  = UnixLabels
 
 module Stream : sig
@@ -12,21 +12,57 @@ module Stream : sig
 
   val iter : 'a t -> f:('a -> unit) -> unit
 
+  val map : 'a t -> f:('a -> 'b) -> 'b t
+
+  val filter : 'a t -> f:('a -> bool) -> 'a t
+
   val concat : ('a t) list -> 'a t
 end = struct
   module S = Stream
 
   type 'a t =
-    ('a S.t) list
+    {mutable streams : ('a S.t) list}
 
   let create f =
-    [S.from (fun _ -> f ())]
+    {streams = [S.from (fun _ -> f ())]}
+
+  let rec next t =
+    match t.streams with
+    | [] ->
+        None
+    | s :: streams ->
+        (match S.next s with
+        | exception Stream.Failure ->
+            t.streams <- streams;
+            next t
+        | x ->
+            Some x
+        )
+
+  let map t ~f =
+    create (fun () ->
+      match next t with
+      | None   -> None
+      | Some x -> Some (f x)
+    )
+
+  let filter t ~f =
+    let rec filter () =
+      match next t with
+      | None ->
+          None
+      | Some x when f x ->
+          Some x
+      | Some _ ->
+          filter ()
+    in
+    create filter
 
   let iter t ~f =
-    List.iter t ~f:(S.iter f)
+    List.iter t.streams ~f:(S.iter f)
 
   let concat ts =
-    List.concat ts
+    {streams = List.concat (List.map ts ~f:(fun {streams} -> streams))}
 end
 
 module In_channel : sig
@@ -42,19 +78,45 @@ end = struct
     )
 end
 
-module Directory_tree : sig
-  val find_files : string -> string Stream.t
+module File : sig
+  type t =
+    { path : string
+    ; size : int
+    }
+
+  val find : string -> t Stream.t
+  (** Find all files in the directory tree, starting from the given root path *)
+
+  val lookup : string Stream.t -> t Stream.t
+  (** Lookup file info for given paths *)
+
+  module Set : sig include Set.S with type elt := t end
 end = struct
-  let find_files root =
+  type t =
+    { path : string
+    ; size : int
+    }
+
+  let compare {path=p1; _} {path=p2; _} =
+    Stdlib.compare p1 p2
+
+  let lookup paths =
+    Stream.map paths ~f:(fun path ->
+      let {Unix.st_size = size; _} = Unix.lstat path in
+      {path; size}
+    )
+
+  let find root =
     let dirs  = Queue.create () in
     let files = Queue.create () in
     let explore parent =
       Array.iter (Sys.readdir parent) ~f:(fun child ->
         let path = Filename.concat parent child in
-        let {Unix.st_kind = file_kind; _} = Unix.lstat path in
+        let {Unix.st_kind = file_kind; st_size; _} = Unix.lstat path in
         match file_kind with
         | Unix.S_REG ->
-            Queue.add path files
+            let file = {path; size = st_size} in
+            Queue.add file files
         | Unix.S_DIR ->
             Queue.add path dirs
         | Unix.S_CHR
@@ -75,83 +137,262 @@ end = struct
           next ()
     in
     Stream.create next
+
+  module Set = Set.Make(struct
+    type elt = t
+    type t = elt
+    let compare = compare
+  end)
 end
 
 type input =
-  | Root_paths of string list
-  | Paths_on_stdin
+  | Stdin
+  | Directories of string list
 
 type output =
   | Stdout
   | Directory of string
 
-let make_input_stream = function
-  | Paths_on_stdin ->
-      In_channel.lines stdin
-  | Root_paths paths ->
-      let paths = StrSet.elements (StrSet.of_list paths) in
-      Stream.concat (List.map paths ~f:Directory_tree.find_files)
+type opt =
+  { input  : input
+  ; output : output
+  ; ignore : Str.regexp option
+  ; sample : int
+  }
+
+type count =
+  { considered_files    : int ref
+  ; considered_bytes    : int ref
+  ; empty               : int ref
+  ; ignored_files       : int ref
+  ; ignored_bytes       : int ref
+  ; unique_size_files   : int ref
+  ; unique_size_bytes   : int ref
+  ; unique_sample_files : int ref
+  ; unique_sample_bytes : int ref
+  ; sampled_files       : int ref
+  ; sampled_bytes       : int ref
+  ; hashed_files        : int ref
+  ; hashed_bytes        : int ref
+  ; digests             : int ref
+  }
+
+let add sum addend =
+  sum := !sum + addend
+
+let make_input_stream input ignore count =
+  let input =
+    match input with
+    | Stdin ->
+        File.lookup (In_channel.lines stdin)
+    | Directories paths ->
+        let paths = StrSet.elements (StrSet.of_list paths) in
+        Stream.concat (List.map paths ~f:File.find)
+  in
+  Stream.filter input ~f:(fun {File.path; size} ->
+    incr count.considered_files;
+    add count.considered_bytes size;
+    let empty = size = 0 in
+    let ignored =
+      match ignore with
+      | Some regexp when (Str.string_match regexp path 0) ->
+          incr count.ignored_files;
+          add count.ignored_bytes size;
+          true
+      | Some _ | None ->
+          false
+    in
+    if empty   then incr count.empty;
+    (not empty) && (not ignored)
+  )
 
 let make_output_fun = function
   | Stdout ->
-      fun digest n_paths paths ->
-        printf "%s %d\n%!" (Digest.to_hex digest) n_paths;
-        List.iter (StrSet.elements paths) ~f:(printf "    %S\n%!")
+      fun digest n_files files ->
+        printf "%s %d\n%!" (Digest.to_hex digest) n_files;
+        List.iter (File.Set.elements files) ~f:(fun {File.path; _} ->
+          printf "    %S\n%!" path
+        )
   | Directory dir ->
-      fun digest _ paths ->
+      fun digest _ files ->
         let digest = Digest.to_hex digest in
         let dir = Filename.concat dir (String.sub digest 0 2) in
         Unix.mkdir dir ~perm:0o700;
         let oc = open_out (Filename.concat dir digest) in
-        List.iter (StrSet.elements paths) ~f:(fun path ->
+        List.iter (File.Set.elements files) ~f:(fun {File.path; _} ->
           output_string oc (sprintf "%S\n%!" path)
         );
         close_out oc
 
-let main input output =
-  let output = make_output_fun  output in
-  let input  = make_input_stream input in
-  let paths_by_digest = Hashtbl.create 1_000_000 in
-  let path_count = ref 0 in
+let sample path ~len ~count =
+  let buf = Bytes.make len ' ' in
+  let ic = open_in_bin path in
+  let rec read pos len =
+    assert (len >= 0);
+    if len = 0 then
+      ()
+    else begin
+      let chunk_size = input ic buf pos len in
+      add count.sampled_bytes chunk_size;
+      if chunk_size = 0 then (* EOF *)
+        ()
+      else
+        read (pos + chunk_size) (len - chunk_size)
+    end
+  in
+  read 0 len;
+  close_in ic;
+  Bytes.to_string buf
+
+let main {input; output; ignore; sample = sample_len} =
   let t0 = Sys.time () in
-  Stream.iter input ~f:(fun path ->
-    incr path_count;
-    try
-      let digest = Digest.file path in
-      let count, paths =
-        match Hashtbl.find_opt paths_by_digest digest with
-        | None ->
-            (0, StrSet.empty)
-        | Some (n, paths) ->
-            (n, paths)
-      in
-      Hashtbl.replace paths_by_digest digest (count + 1, StrSet.add path paths)
-    with Sys_error e ->
-      eprintf "WARNING: Failed to process %S: %S\n%!" path e
+  let count =
+    { considered_files    = ref 0
+    ; considered_bytes    = ref 0
+    ; empty               = ref 0
+    ; ignored_files       = ref 0
+    ; ignored_bytes       = ref 0
+    ; unique_size_files   = ref 0
+    ; unique_size_bytes   = ref 0
+    ; sampled_files       = ref 0
+    ; sampled_bytes       = ref 0
+    ; hashed_files        = ref 0
+    ; hashed_bytes        = ref 0
+    ; unique_sample_files = ref 0
+    ; unique_sample_bytes = ref 0
+    ; digests             = ref 0
+    }
+  in
+  let output = make_output_fun  output in
+  let input  = make_input_stream input ignore count in
+  let files_by_size = Hashtbl.create 1_000_000 in
+  let files_by_sample = Hashtbl.create 1_000_000 in
+  let files_by_digest = Hashtbl.create 1_000_000 in
+  let process tbl ~group ~file =
+    let count, files =
+      match Hashtbl.find_opt tbl group with
+      | None ->
+          (0, File.Set.empty)
+      | Some (n, files) ->
+          (n, files)
+    in
+    Hashtbl.replace tbl group (count + 1, File.Set.add file files)
+  in
+  (* TODO: Make a nice(r) abstraction to re-assemble pieces in the pipeline:
+   *
+   * from input           to files_by_size
+   * from files_by_size   to files_by_sample
+   * from files_by_sample to files_by_digest
+   * from files_by_digest to output
+   *
+   * input |> files_by_size |> files_by_sample |> files_by_digest |> output
+   *)
+  let t0_group_by_size = Sys.time () in
+  Stream.iter input ~f:(fun ({File.size; _} as file) ->
+    process files_by_size ~group:size ~file
   );
-  Hashtbl.iter (fun d (n, ps) -> if n > 1 then output d n ps) paths_by_digest;
+  let t1_group_by_size = Sys.time () in
+  let t0_group_by_sample = Sys.time () in
+  Hashtbl.iter
+    (fun _ (n, files) ->
+      (* Skip files with unique sizes *)
+      if n > 1 then
+        File.Set.iter
+          (fun ({File.path; _} as file) ->
+            incr count.sampled_files;
+            process
+              files_by_sample
+              ~group:(sample path ~len:sample_len ~count)
+              ~file
+          )
+          files
+      else
+        File.Set.iter
+          (fun {File.size; _} ->
+            incr count.unique_size_files;
+            add count.unique_size_bytes size
+          )
+          files
+    )
+    files_by_size;
+  let t1_group_by_sample = Sys.time () in
+  let t0_group_by_digest = Sys.time () in
+  Hashtbl.iter
+    (fun _ (n, files) ->
+      (* Skip files with unique samples *)
+      if n > 1 then
+        File.Set.iter
+          (fun ({File.path; size} as file) ->
+            incr count.hashed_files;
+            add count.hashed_bytes size;
+            process files_by_digest ~group:(Digest.file path) ~file
+          )
+          files
+      else
+        File.Set.iter
+          (fun {File.size; _} ->
+            incr count.unique_sample_files;
+            add count.unique_sample_bytes size;
+          )
+          files
+    )
+    files_by_sample;
+  let t1_group_by_digest = Sys.time () in
+  Hashtbl.iter
+    (fun d (n, files) ->
+      incr count.digests;
+      if n > 1 then
+        output d n files
+    )
+    files_by_digest;
   let t1 = Sys.time () in
-  eprintf "Processed %d files in %f seconds.\n%!" !path_count (t1 -. t0)
+  let b_to_mb b = (float_of_int b) /. 1024. /. 1024. in
+  let b_to_gb b = (b_to_mb b) /. 1024. in
+  eprintf "Time                         : %8.2f seconds\n%!" (t1 -. t0);
+  eprintf "Considered                   : %8d files  %6.2f Gb\n%!"
+    !(count.considered_files)
+    (b_to_gb !(count.considered_bytes));
+  eprintf "Sampled                      : %8d files  %6.2f Gb\n%!"
+    !(count.sampled_files)
+    (b_to_gb !(count.sampled_bytes));
+  eprintf "Hashed                       : %8d files  %6.2f Gb  %6.2f seconds\n%!"
+    !(count.hashed_files)
+    (b_to_gb !(count.hashed_bytes))
+    (t1_group_by_digest -. t0_group_by_digest);
+  eprintf "Digests                      : %8d\n%!"
+    !(count.digests);
+  eprintf "Duplicates (Hashed - Digests): %8d\n%!"
+    (!(count.hashed_files) - !(count.digests));
+  eprintf "Skipped due to 0      size   : %8d files\n%!" !(count.empty);
+  eprintf "Skipped due to unique size   : %8d files  %6.2f Gb  %6.2f seconds\n%!"
+    !(count.unique_size_files)
+    (b_to_gb !(count.unique_size_bytes))
+    (t1_group_by_size -. t0_group_by_size);
+  eprintf "Skipped due to unique sample : %8d files  %6.2f Gb  %6.2f seconds\n%!"
+    !(count.unique_sample_files)
+    (b_to_gb !(count.unique_sample_bytes))
+    (t1_group_by_sample -. t0_group_by_sample);
+  eprintf "Ignored due to regex match   : %8d files  %6.2f Gb\n%!"
+    !(count.ignored_files)
+    (b_to_gb !(count.ignored_bytes))
 
-let () =
-  let input  = ref Paths_on_stdin in
-  let output = ref Stdout in
-  let assert_file_exists path =
-    if Sys.file_exists path then
-      ()
-    else begin
-      eprintf "File does not exist: %S\n%!" path;
+let get_opt () : opt =
+  let assert_ test x msg =
+    if not (test x) then begin
+      eprintf "%s\n%!" msg;
       exit 1
     end
   in
+  let assert_file_exists path =
+    assert_ Sys.file_exists path (sprintf "File does not exist: %S" path)
+  in
   let assert_file_is_dir path =
-    if Sys.is_directory path then
-      ()
-    else begin
-      eprintf "File is not a directory: %S\n%!" path;
-      exit 1
-    end
+    assert_ Sys.is_directory path (sprintf "File is not a directory: %S" path)
   in
+  let input  = ref Stdin in
+  let output = ref Stdout in
+  let ignore = ref None in
+  let sample = ref 256 in
   let spec =
     [ ( "-out"
       , Arg.String (fun path ->
@@ -161,6 +402,14 @@ let () =
         )
       , " Output to this directory instead of stdout."
       )
+    ; ( "-ignore"
+      , Arg.String (fun regexp -> ignore := Some (Str.regexp regexp))
+      , " Ignore file paths which match this regexp pattern (see Str module)."
+      )
+    ; ( "-sample"
+      , Arg.Set_int sample
+      , (sprintf " Byte size of file samples to use. Default: %d" !sample)
+      )
     ]
   in
   Arg.parse
@@ -169,10 +418,21 @@ let () =
       assert_file_exists path;
       assert_file_is_dir path;
       match !input with
-      | Paths_on_stdin ->
-          input := Root_paths [path]
-      | Root_paths paths ->
-          input := Root_paths (path :: paths)
+      | Stdin ->
+          input := Directories [path]
+      | Directories paths ->
+          input := Directories (path :: paths)
     )
     "";
-  main !input !output
+  assert_
+    (fun x -> x > 0)
+    !sample
+    (sprintf "Sample size cannot be negative: %d" !sample);
+  { input  = !input
+  ; output = !output
+  ; ignore = !ignore
+  ; sample = !sample
+  }
+
+let () =
+  main (get_opt ())